PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 425aa    MW: 48538.4 Da    PI: 6.4674
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087395.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012302324123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp C+ +F+++ ++  H  +H
  XP_010087395.1 302 YTCPRCKGVFTTSQTFAAHVGSH 324
                     9******************8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.829302329IPR007087Zinc finger, C2H2
PROSITE patternPS000280304324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALSFNPDSY SSLGLHNQPI NGQFYSGVVL GDHTFENVFI GSQQPNRLGL HQSNQFISQL  60
ITDGNPTTHQ TTFSSQEAHI SQRNTCLVPQ RIQLVETVNI DYFPSQNQAI SSVGPLGGQV  120
CVTEVVRTRE IVRTQLINSA STRDRFLVPN NHGYNSWIND QGQTHLQNQA NHSTFTETQP  180
FIDAYCPNTI TQSSSHCFHN TKYEEFNTHV QESNYIIGDN TSSDPQPLSV YFPHETKRPI  240
PTDNHDFYES RDFPFTEYCS RYNRVFHDQG ENNISDQDDD DEDNFMGDGR THSLPYKKYG  300
PYTCPRCKGV FTTSQTFAAH VGSHYKSESA EERRKRHLAK YGKKHLRLVK SRNEVNIVPY  360
KPHFNEPVAL DRHNKKNEVK TIGSEDQESN KSTGKEILVT LSFRGEKFEG LFDVPIKEEP  420
MEMIS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087395.10.0hypothetical protein L484_018421
TrEMBLW9QD610.0W9QD61_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1894066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.19e-24C2H2-like zinc finger protein